katsu/pyproject.toml at develop · bento-platform/katsu · GitHub

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[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.poetry]
name = "chord_metadata_service"  # can be renamed to katsu if inner module directory is renamed too
version = "15.1.0"
description = "An implementation of a clin/pheno metadata store for the Bento platform."
authors = [
    "Ksenia Zaytseva",
    "David Lougheed <david.lougheed@mail.mcgill.ca>",
    "Simon Chénard <simon.chenard2@mcgill.ca>",
    "Romaine Grégoire",
    "Paul Pillot <paul.pillot@computationalgenomics.ca>",
    "Son Chau",
]
readme = "README.md"
packages = [{include = "chord_metadata_service"}]
include = [
    "chord_metadata_service/chord/workflows/wdls/*.wdl",
    "chord_metadata_service/chord/tests/*.json",
    "chord_metadata_service/dats/*",
    "chord_metadata_service/restapi/tests/*.json",
]
repository = "https://github.com/bento-platform/katsu"
license = "LGPL-3.0-only"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)",
    "Operating System :: OS Independent"
]

[tool.poetry.dependencies]
python = "^3.12.0"
aiohttp = "~3.13.5"
bento-lib = {version = "^17.2.0", extras = ["django"]}
Django = "~6.1.0"
django-autocomplete-light = "^5.0.0"
django-cors-headers = "^4.9.0"
django-filter = "~26.1"
djangorestframework = "~3.18.0"
djangorestframework-camel-case = "^1.4.1"
drf-spectacular = "^0.30.0"
jsonschema = {version = "~4.26.0", extras = ["format"]}
psycopg2-binary = "~2.9.11"
PyJWT = {extras = ["crypto"], version = "^2.10.1"}
python-dateutil = "^2.9.0.post0"
python-dotenv = "^1.1.1"
rdflib = "^6.3.2"
requests = "^2.33.0"
rfc3987 = "^1.3.8"
tabulate = "^0.10.0"
uritemplate = "^4.2.0"
pyhumps = "^3.8.0"
adrf = "^0.1.12"
referencing = "^0.37.0"
django-structlog = "^10.0.0"
pycountry = "^26.2.16"
structlog = "^26.1.0"
pydantic = "^2.12.3"
openpyxl = "^3.1.5"

[tool.poetry.group.dev.dependencies]
coverage = "^7.15.4"
flake8 = "^7.3.0"
ruff = "^0.16.2"
tox = "^4.31.0"
debugpy = "^1.8.17"
daphne = "^4.2.1"
aioresponses = "^0.7.8"

[tool.ruff]
line-length = 120
extend-exclude = ["chord_metadata_service/*/migrations"]

[tool.ruff.lint]
# TODO: remove RUF100 when flake8 gets unplugged
ignore = ["PYI041", "RUF012", "RUF022", "RUF100", "T100"]