Issues

Review/Revisit Funnel's S3 Working Directory Behavior
Task
calypr/funnel#1412 · opened on May 11, 2026 · GCP Batch Production Support
Releases still use permalinks in the ohsu-comp-bio namespace which no longer contains those resources.
Bug
calypr/funnel#1391 · opened on Apr 16, 2026
GCP Batch: Verify Compliance Tests
Bug
calypr/funnel#1273 · opened on Dec 9, 2025 · GCP Batch Production Support
GCP Batch: Possible to remove Bucket Prefix in Inputs + Outputs?
Bug
calypr/funnel#1272 · opened on Dec 9, 2025 · GCP Batch Production Support
3
GCP Batch: Task Logs: appear in GCP Batch Console, but not retrieved by Funnel yet
Bug
calypr/funnel#1271 · opened on Dec 9, 2025 · GCP Batch Production Support
GCP Batch: Task State Syncing: need to update reconciler to fetch Task State
Bug
calypr/funnel#1270 · opened on Dec 9, 2025 · GCP Batch Production Support
Explore support for alternative $GOOS/$GOARCH
Feature
calypr/funnel#1258 · opened on Nov 25, 2025
Unclear of which commits are being packaged as Docker images on Quay.io
Bug
calypr/funnel#1242 · opened on Aug 27, 2025 · 0.11.4
Allow tolerant mode for null string fields in TES API requests
Bug
calypr/funnel#1239 · opened on Aug 13, 2025
3
Generic S3 Regression Bug — function not implemented 🐛
Bug
calypr/funnel#1229 · opened on Jun 9, 2025 · 0.11.4
Recreate developer environment for Gen3-Workflow, Nextflow, and Funnel
Task
calypr/funnel#1227 · opened on Jun 5, 2025 · 0.11.4
2
Invalid mount config for type "bind": destination can't be /
Bug
calypr/funnel#1225 · opened on May 29, 2025 · 0.11.4
5
Minor issue #5: output directory not working as expected #24
Bug
calypr/funnel#1221 · opened on May 21, 2025 · 0.11.4
Blocker issue #4: "invalid state transition" errors when worker or executor jobs are restarted
Bug
calypr/funnel#1220 · opened on May 21, 2025 · 0.11.4
Blocker issue #3: Funnel returns 200 and no error log when task cannot be created (network policies on)
Bug
calypr/funnel#1219 · opened on May 21, 2025 · 0.11.4
2
Postgres Support
Feature
calypr/funnel#1192 · opened on Apr 17, 2025 · Gen3Workflow Production-Ready Support
1
Design Doc: Investigate GCE Batch + TES
Feature
calypr/funnel#1188 · opened on Apr 11, 2025 · 0.11.4
3
Plugin fails to exit gracefully
Bug
calypr/funnel#1187 · opened on Apr 11, 2025
Test support for S3 buckets with KMS encryption
Bug
calypr/funnel#1182 · opened on Apr 2, 2025 · 0.11.4
Add API Spec for Funnel Plugin
Task
calypr/funnel#1174 · opened on Mar 13, 2025 · 0.11.4
Funnel Startup Image
calypr/funnel#1173 · opened on Mar 13, 2025
CSI Driver Mount Issue causes multiple retries before readtime out error
calypr/funnel#1172 · opened on Mar 13, 2025
Test different namespaces for Worker + Executor Pod
Bug
calypr/funnel#1169 · opened on Mar 12, 2025
4
Create guide for Plugin authors and users (schedule demo/pair programming)
calypr/funnel#1165 · opened on Mar 5, 2025
Write up steps and examples so CTDS can run Plugin
Task
calypr/funnel#1164 · opened on Mar 5, 2025