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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 41 10

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 26 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 695 repositories
  • lamf-analysis Public

    Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean

    AllenNeuralDynamics/lamf-analysis's past year of commit activity
    Jupyter Notebook 1 MIT 2 21 2 Updated Sep 12, 2026
  • AIND-ophys-mFISH-GLM Public

    GLM for ophys-mFISH datasets from AIND

    AllenNeuralDynamics/AIND-ophys-mFISH-GLM's past year of commit activity
    Python 0 MIT 0 7 1 Updated Sep 12, 2026
  • Aind.Experiment.VrForaging Public

    A repository to run VrForaging behavior experiments and compatible physiology platforms in AIND

    AllenNeuralDynamics/Aind.Experiment.VrForaging's past year of commit activity
    Python 0 MIT 1 1 1 Updated Sep 12, 2026
  • aind-vr-foraging-primary-data-aggregator Public

    A capsule that periodically aggregates tabular for the vr-foraging task

    AllenNeuralDynamics/aind-vr-foraging-primary-data-aggregator's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 11, 2026
  • biodata-cache Public

    Caching tools for storing expensive DocDB queries and S3 data tables in Redshift

    AllenNeuralDynamics/biodata-cache's past year of commit activity
    Python 0 MIT 1 3 9 Updated Sep 11, 2026
  • harp.core.pico Public Forked from harp-tech/core.pico

    A Harp core implementation on the RP2040

    AllenNeuralDynamics/harp.core.pico's past year of commit activity
    C++ 0 MIT 3 2 1 Updated Sep 12, 2026
  • zombie Public
    AllenNeuralDynamics/zombie's past year of commit activity
    JavaScript 0 MIT 1 12 1 Updated Sep 11, 2026
  • dynamic-foraging-processing Public

    A library for processing dynamic foraging behavior data acquired on the new acquisition standard

    AllenNeuralDynamics/dynamic-foraging-processing's past year of commit activity
    Python 0 MIT 0 7 5 Updated Sep 11, 2026
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging's past year of commit activity
    C# 3 MIT 0 8 1 Updated Sep 11, 2026
  • aind-motion-energy-capsule Public

    motion energy capsule on CO

    AllenNeuralDynamics/aind-motion-energy-capsule's past year of commit activity
    Shell 0 MIT 0 2 0 Updated Sep 11, 2026