Issues

• v-annotate.pl: alignment doctoring can fail with "failed to account for all nucleotides ... min_uapos should be 1 but it is 0"

  NLM-DIR/vadr#106 · Filter by author nawrockie opened on Oct 8, 2026

• v-annotate.pl does not include pseudoknot annotation (if present in cmbuild input file) in output .stk files

  NLM-DIR/vadr#97 · Filter by author nawrockie opened on Feb 17, 2026

• v-annotate.pl: using -s with CMs built with --hand leads to alignment merging errors

  NLM-DIR/vadr#93 · Filter by author nawrockie opened on Sep 16, 2025
  1

• Model info file: alternative_ftr_set_subn values don't work properly if they contain whitespace

  NLM-DIR/vadr#88 · Filter by author nawrockie opened on Sep 24, 2024

• v-annotate.pl cannot be run with apptainer exec using the VADR Biocontainers Apptainer/Singularity image

  NLM-DIR/vadr#87 · Filter by author peterk87 opened on Sep 20, 2024
  1

• VADR predicted nested genes, prevents submission to ENA

  NLM-DIR/vadr#54 · Filter by author taltman opened on Dec 23, 2021
  4

• VADR produces qualifier with invalid value

  NLM-DIR/vadr#53 · Filter by author taltman opened on Dec 21, 2021
  4

• VADR doesn't annotate second segment of segmented CoV genome

  NLM-DIR/vadr#52 · Filter by author taltman opened on Dec 16, 2021
  6

• Feature request: avoid dependency on C/C++ build toolchain

  NLM-DIR/vadr#32 · Filter by author kislyuk opened on Mar 6, 2021

• Feature request: pre-built VADR APT package

  NLM-DIR/vadr#31 · Filter by author kislyuk opened on Mar 5, 2021
  2