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arundasan91/README.md

Hi there 👋 I'm Arun

I'm a Postdoctoral Associate at UPMC Hillman Cancer Center, working at the intersection of artificial intelligence, spatial biology, and computational genomics.

  • 🧬 I develop computational and AI methods for single-cell and spatial omics, including spatial transcriptomics and proteomics.
  • 🤖 My research focuses on using machine learning, deep learning, graph-based methods, and agentic AI to understand tissue organization, cellular interactions, and disease-associated molecular patterns.
  • 🔬 I'm particularly interested in building tools that make complex spatial biology analyses more accessible, reproducible, and biologically interpretable.
  • 🧠 I lead the development of spatiAlytica, a viewer-grounded agentic AI platform for interactive, reproducible, and collaborative spatial omics analysis.
  • 💻 Ask me about machine learning, deep learning, spatial omics, scientific AI, cloud computing, distributed systems, and data science.
  • 📄 You can find my publications on Google Scholar.
  • 📷 Outside research, I enjoy photography. You can find me on Instagram at @arun91dasan or on X/Twitter at @arun_not_arun.

നാട്ടില് എവിടെയാ? 😁

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  1. Huang-AI4Medicine-Lab/spatial_analysis_KS Huang-AI4Medicine-Lab/spatial_analysis_KS Public

    Spatial Single-Cell Atlas Reveals KSHV-Driven Broad Cellular Reprogramming, Progenitor Expansion, Immune and Vascular Remodeling in Kaposi's Sarcoma

    Jupyter Notebook

  2. ScSTA_tutorial ScSTA_tutorial Public

    Single-cell Spatial Transcriptomics Analysis Tutorial - IEEE BHI 2023

    Jupyter Notebook 5 1

  3. pubmed_pdf_downloader pubmed_pdf_downloader Public

    pubmed_pdf_downloader is a Python package that allows users to bulk download PDFs of articles from PubMed Central using PMCIDs.

    Python 21 4

  4. NCI-HTAN-Jamborees/HTANalyzer-LLM NCI-HTAN-Jamborees/HTANalyzer-LLM Public

    HTANalyzer-LLM: Large Language Model for Analyzing HTAN Spatial Transcriptomics Data

    Jupyter Notebook 4 2

  5. Huang-AI4Medicine-Lab/spatiAlytica-discussion-forum Huang-AI4Medicine-Lab/spatiAlytica-discussion-forum Public