Samtools version dump

CHANGELOG.md

@@ -31,7 +31,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
   4.0.2](https://github.com/nf-core/tools/releases/tag/4.0.2).
 - [[#519] (https://github.com/nf-core/chipseq/issues/519)] - Changed merged libraries suffix to `.mLb.`.
 - [[#456] (https://github.com/nf-core/chipseq/issues/456)] - Use `--skip_preseq` by default.
-- [[#530] (https://github.com/nf-core/chipseq/issues/456)] - Update `hommer/annotatepeaks` to topic channels.
+- [[#526] (https://github.com/nf-core/chipseq/issues/526)] - Bump Samtools version to 1.24.
+- [[#530] (https://github.com/nf-core/chipseq/issues/530)] - Update `hommer/annotatepeaks` to topic channels.
 - [[#531] (https://github.com/nf-core/chipseq/issues/531)] - Changed chromap decompression - untarfiles (depreciated) to untar modules
 
 ### Parameters
@@ -75,7 +76,7 @@ the last release have been listed below for reference.
 | deeptools                   | 3.5.5       | 3.5.6       |
 | bowtie2                     | 2.5.2       | 2.5.4       |
 | picard                      | 3.2.0       | 3.4.0       |
-| samtools                    | 1.15.1      | 1.20        |
+| samtools                    | 1.23.1      | 1.24        |
 | bwa                         | 0.7.18      | 0.7.19      |
 | chromap                     | 0.2.6       | 0.3.2       |
 |                             |             |             |

modules.json

@@ -146,32 +146,32 @@
                     },
                     "samtools/faidx": {
                         "branch": "master",
-                        "git_sha": "b2e78932ef01165fd85829513eaca29eff8e640a",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["modules"]
                     },
                     "samtools/flagstat": {
                         "branch": "master",
-                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["bam_stats_samtools", "modules"]
                     },
                     "samtools/idxstats": {
                         "branch": "master",
-                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["bam_stats_samtools", "modules"]
                     },
                     "samtools/index": {
                         "branch": "master",
-                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["bam_markduplicates_picard", "bam_sort_stats_samtools", "modules"]
                     },
                     "samtools/sort": {
                         "branch": "master",
-                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["bam_sort_stats_samtools", "modules"]
                     },
                     "samtools/stats": {
                         "branch": "master",
-                        "git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["bam_stats_samtools", "modules"]
                     },
                     "subread/featurecounts": {
@@ -205,22 +205,22 @@
                 "nf-core": {
                     "bam_markduplicates_picard": {
                         "branch": "master",
-                        "git_sha": "1298fbd2004c2913d6682ce4a419647d97a8fc3f",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["subworkflows"]
                     },
                     "bam_sort_stats_samtools": {
                         "branch": "master",
-                        "git_sha": "156feda0cb6589cd29c04902004fa3b53bc00205",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["fastq_align_bowtie2", "fastq_align_bwa", "fastq_align_chromap"]
                     },
                     "bam_stats_samtools": {
                         "branch": "master",
-                        "git_sha": "156feda0cb6589cd29c04902004fa3b53bc00205",
+                        "git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
                         "installed_by": ["bam_markduplicates_picard", "bam_sort_stats_samtools"]
                     },
                     "fastq_align_bowtie2": {
                         "branch": "master",
-                        "git_sha": "a0961c41021561ac7cf139f86bd7812a2f99e994",
+                        "git_sha": "0cd85f32cf1a1828205b16e4267277ba9457570b",
                         "installed_by": ["subworkflows"]
                     },
                     "fastq_align_bwa": {