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@satijalab

satijalab

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  1. seurat seurat Public

    R toolkit for single cell genomics

    R 2.8k 996

  2. azimuth azimuth Public

    A Shiny web app for mapping datasets using Seurat v4

    HTML 151 45

  3. seurat-wrappers seurat-wrappers Public

    Community-provided extensions to Seurat

    R 371 146

  4. seurat-data seurat-data Public

    Dataset distribution for Seurat

    R 159 46

Repositories

Showing 10 of 27 repositories
  • seurat Public

    R toolkit for single cell genomics

    satijalab/seurat's past year of commit activity
    R 2,798 996 182 37 Updated Sep 11, 2026
  • seurat-docker Public

    Docker images of Seurat

    satijalab/seurat-docker's past year of commit activity
    Dockerfile 9 9 0 0 Updated Aug 14, 2026
  • scSLIDE Public
    satijalab/scSLIDE's past year of commit activity
    R 13 0 3 0 Updated Aug 14, 2026
  • AzimuthAPI Public

    R interface to the Pan-human Azimuth neural network for cell type annotation

    satijalab/AzimuthAPI's past year of commit activity
    R 12 MIT 1 6 0 Updated Jul 29, 2026
  • panhumanpy Public
    satijalab/panhumanpy's past year of commit activity
    Python 32 MIT 3 6 5 Updated Jul 27, 2026
  • seurat-object Public
    satijalab/seurat-object's past year of commit activity
    R 35 35 43 10 Updated Jul 17, 2026
  • pha-training-data Public

    Code for preparing the Pan-human Azimuth training data

    satijalab/pha-training-data's past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jul 16, 2026
  • seurat-wrappers Public

    Community-provided extensions to Seurat

    satijalab/seurat-wrappers's past year of commit activity
    R 371 GPL-3.0 146 89 20 Updated Jun 29, 2026
  • azimuth Public

    A Shiny web app for mapping datasets using Seurat v4

    satijalab/azimuth's past year of commit activity
    HTML 151 GPL-3.0 45 101 5 Updated May 22, 2026
  • azimuth_website Public
    satijalab/azimuth_website's past year of commit activity
    HTML 1 0 0 1 Updated Apr 28, 2026
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