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  1. sgkit sgkit Public

    Scalable genetics toolkit

    Python 281 41

  2. bio2zarr bio2zarr Public

    Convert bioinformatics file formats to Zarr

    Python 47 14

  3. vcztools vcztools Public

    bcftools-compatible querying and format conversion for VCF Zarr

    Python 28 6

  4. vcf-zarr-spec vcf-zarr-spec Public

    VCF Zarr Specification

    19 4

  5. vczstore vczstore Public

    Tools for managing a VCF Zarr store

    Python 7 2

  6. sgkit-requirements sgkit-requirements Public

    Repo for collecting requirements.

    Jupyter Notebook 6 1

Repositories

Showing 10 of 17 repositories
  • sgkit Public

    Scalable genetics toolkit

    sgkit-dev/sgkit's past year of commit activity
    Python 281 Apache-2.0 41 199 (2 issues need help) 11 Updated Sep 7, 2026
  • bio2zarr Public

    Convert bioinformatics file formats to Zarr

    sgkit-dev/bio2zarr's past year of commit activity
    Python 47 Apache-2.0 14 51 (2 issues need help) 2 Updated Sep 2, 2026
  • biofuse Public

    Read-only views of VCF Zarr data in standard file formats using a fuse filesystem

    sgkit-dev/biofuse's past year of commit activity
    Python 4 Apache-2.0 1 2 0 Updated Sep 1, 2026
  • vczstore Public

    Tools for managing a VCF Zarr store

    sgkit-dev/vczstore's past year of commit activity
    Python 7 Apache-2.0 2 13 1 Updated Jun 9, 2026
  • vcztools Public

    bcftools-compatible querying and format conversion for VCF Zarr

    sgkit-dev/vcztools's past year of commit activity
    Python 28 Apache-2.0 6 53 3 Updated Jun 8, 2026
  • vcf-zarr-spec Public

    VCF Zarr Specification

    sgkit-dev/vcf-zarr-spec's past year of commit activity
    19 Apache-2.0 4 17 1 Updated Jun 4, 2026
  • sgkit-dev/sgkit-benchmarks-asv's past year of commit activity
    JavaScript 0 2 0 0 Updated Jul 1, 2025
  • vcf-zarr-publication Public

    Manuscript and associated scripts for vcf-zarr publication

    sgkit-dev/vcf-zarr-publication's past year of commit activity
    Jupyter Notebook 3 11 1 0 Updated Apr 1, 2025
  • SAIGE-VCZ Public Forked from saigegit/SAIGE

    SAIGE extension that supports VCF Zarr

    sgkit-dev/SAIGE-VCZ's past year of commit activity
    C++ 1 GPL-3.0 40 0 0 Updated Mar 6, 2025
  • hypothesis-vcf Public

    Hypothesis strategy for generating VCF

    sgkit-dev/hypothesis-vcf's past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Jan 29, 2025

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