Issues

• centWave: peakwidth-to-scans conversion assumes evenly spaced MS1 scans (uneven in DDA data)

  sneumann/xcms#852 · Filter by author jmorim opened on Oct 8, 2026
  1

• loadXcmsData does not update the dataOrigin

  sneumann/xcms#851 · Filter by author jorainer opened on Sep 25, 2026

• Investigate Metabonaut LC-MS data

  sneumann/xcms#847 · Filter by author jorainer opened on Sep 1, 2026

• Build / check failure on Linux / macOS:

  sneumann/xcms#845 · Filter by author sneumann opened on Aug 24, 2026
  2

• CentWaveParam(roiList=...) uses scan indices only — shared ROIs break across files with different MS1 scan counts / rates

  sneumann/xcms#838 · Filter by author DrRuiLi opened on Jul 27, 2026

• Add support for the new Chromatograms package

  enhancement
  sneumann/xcms#836 · Filter by author jorainer opened on Jul 22, 2026

• CentWavePredIsoParam assumes Carbon isotopes only; lacks support for N/O isotopes

  sneumann/xcms#830 · Filter by author DrRuiLi opened on Mar 24, 2026

• refineChromPeaks,MergeNeighboringPeaksParam fails to merge nested peaks

  bug
  sneumann/xcms#825 · Filter by author jorainer opened on Feb 6, 2026
  1

• Remove dependency on msdata

  sneumann/xcms#824 · Filter by author jorainer opened on Feb 4, 2026
  

• Disable ProgressBar when running xcms::chromatogram

  sneumann/xcms#817 · Filter by author hhabra opened on Sep 26, 2025
  3

• Have a "refineFeatures" method

  enhancement
  sneumann/xcms#813 · Filter by author jorainer opened on Sep 10, 2025
  3

• Issue with the .plotChromPeakDensity function?

  sneumann/xcms#812 · Filter by author melpetera opened on Sep 3, 2025
  8

• "missing" unused argument in chromatorgram()

  sneumann/xcms#810 · Filter by author arebruvold opened on Aug 14, 2025
  1

• proof of concept for faster EIC extraction

  sneumann/xcms#809 · Filter by author stanstrup opened on Aug 11, 2025

• Input data takes too long to load.

  sneumann/xcms#808 · Filter by author esalphaz16-ops opened on Aug 3, 2025
  7

• Build error on release on macOS, check error on Linux and Windows

  sneumann/xcms#804 · Filter by author sneumann opened on Jun 9, 2025
  1

• Check error on devel on all platforms ref@.Data not equal to res@.Data

  sneumann/xcms#803 · Filter by author sneumann opened on Jun 9, 2025
  2

  

• Subsetting a XcmsExperiment object after alignment does not revert retention times of detected chrom peaks

  bug
  sneumann/xcms#801 · Filter by author jorainer opened on May 27, 2025
  1

  

• Deprecate xcmsFragments and remove in next devel cycle

  sneumann/xcms#800 · Filter by author sneumann opened on May 26, 2025
  

• Unexpected results in subset-based alignment and alignment against reference

  sneumann/xcms#795 · Filter by author jorainer opened on May 14, 2025
  3

  

• add peak info in manualChromPeaks output

  sneumann/xcms#788 · Filter by author mar-garcia opened on Feb 12, 2025

• multiple methods tables found for ‘filterFeatures’

  sneumann/xcms#783 · Filter by author sneumann opened on Dec 15, 2024
  1

• Parallel peakpicking and/or concatenating XcmsExperiment objects

  sneumann/xcms#781 · Filter by author pallevillesen opened on Nov 28, 2024
  12

• adjustRtime Errors

  sneumann/xcms#777 · Filter by author jzhou19 opened on Nov 6, 2024
  4

• xcms on conda

  sneumann/xcms#775 · Filter by author cbroeckl opened on Oct 8, 2024
  10