tree-sequences

Here are 8 public repositories matching this topic...

Population-scale Ancestral Recombination Graph (ARG) library

python science bioinformatics genomics phylogenetics tree-sequences

Forward-time simulation in Python using fwdpp

Rust bindings for the tskit library

rust rust-bindings tskit tree-sequences

Quantitative trait simulation for ARGs

args tskit tree-sequences

Forward time simulation, rust, and tree sequences.

rust simulation tskit tree-sequences

Calculate IBD segments from tree sequence using tskit C API

Genome-wide genotype imputation using tree sequences.

bioinformatics genomics tree-sequences

Unified likelihood inference of ancestral alleles under supplied or inferred genealogies.

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