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document mutation_at and nucleotide_at; closes #369
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Update uv.lock via uv sync -U
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note, closes #435
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old-style mutations
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switch from "derived_states" to "slim_ids" in mutation metadata
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num_traits and num_chromosomes arguments to annotate; closes #410
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num_traits and num_chromosomes arguments to annotate; closes #410
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num_traits and num_chromosomes arguments to annotate; closes #410
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switched over to using last slim mutation ID
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compute traits by hand in tests
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test for trait consistency
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