Issues

• Modernize old notes about a new snarl distance approach

  vgteam/libbdsg#243 · Filter by author adamnovak opened on Jul 30, 2026

• make fails with fatal error: opening dependency file bdsg/obj/eades_algorithm.d: No such file or directory due to non-existing directory

  vgteam/libbdsg#240 · Filter by author paulmenzel opened on Apr 27, 2026
  2

• Add PackedVector iterators

  vgteam/libbdsg#231 · Filter by author adamnovak opened on Nov 18, 2025

• upgrade libbdsg version from pip installation

  vgteam/libbdsg#203 · Filter by author Plogeur opened on Aug 26, 2024
  1

• When I use python bdsg to deal with a packedgraph, I found a question.

  vgteam/libbdsg#194 · Filter by author pioneer-pi opened on Dec 23, 2023
  3

• Docs don't seem to properly list C++ methods anymore

  vgteam/libbdsg#161 · Filter by author adamnovak opened on Aug 22, 2022

• Docs/Python bindings broke because of SnarlDistanceIndex

  vgteam/libbdsg#160 · Filter by author adamnovak opened on Aug 22, 2022
  1

  

• Overlays don't work well with haplotype paths

  vgteam/libbdsg#158 · Filter by author adamnovak opened on May 11, 2022

• Overlays don't expose path metadata methods

  vgteam/libbdsg#157 · Filter by author adamnovak opened on May 11, 2022

• Building a big bdsg::yomo::UniqueMappedPointer<bdsg::MappedIntVector> and *then* saving it causes total chain size reported by get_usage() to increase

  vgteam/libbdsg#132 · Filter by author adamnovak opened on Nov 15, 2021

• Add low level methods for handle graphs

  enhancement
  vgteam/libbdsg#129 · Filter by author rlorigro opened on Oct 4, 2021
  2

• BUILD_STATIC flag not working

  vgteam/libbdsg#123 · Filter by author rlorigro opened on Sep 3, 2021

• Graph implementations in libbdsg use copy constructors instead of move during vector reallocations

  vgteam/libbdsg#118 · Filter by author jeizenga opened on Aug 21, 2021

• How to extract most likely position of series of nodes

  vgteam/libbdsg#104 · Filter by author RenzoTale88 opened on Mar 25, 2021
  5

• Deprecate libbdsg odgi

  vgteam/libbdsg#102 · Filter by author adamnovak opened on Mar 15, 2021
  

• Example of using bdsg.bdsg.PositionOverlay

  vgteam/libbdsg#93 · Filter by author RenzoTale88 opened on Jan 19, 2021
  1

• We should be able to install via pip without checking the python3 on the PATH

  vgteam/libbdsg#82 · Filter by author adamnovak opened on Oct 1, 2020

• Needs to be able to read GFA by itself

  vgteam/libbdsg#79 · Filter by author adamnovak opened on Sep 25, 2020
  1

• reinterpret_cast should maybe be static_cast

  vgteam/libbdsg#76 · Filter by author adamnovak opened on Aug 24, 2020
  1

• Too hard to use as an ExternalProject

  vgteam/libbdsg#73 · Filter by author adamnovak opened on Jul 8, 2020
  1

• missing Python.h on system where it is present

  vgteam/libbdsg#65 · Filter by author ekg opened on Apr 26, 2020
  1

• Resizing factor bug in PackedGraph

  vgteam/libbdsg#46 · Filter by author jeizenga opened on Mar 16, 2020

• Deleting steps while looping through the steps on a node

  vgteam/libbdsg#35 · Filter by author adamnovak opened on Dec 11, 2019

• Looks for DYNAMIC in the wrong(?) place

  vgteam/libbdsg#23 · Filter by author adamnovak opened on Sep 12, 2019
  1

• Let's get Travis running the unit tests

  vgteam/libbdsg#21 · Filter by author glennhickey opened on Sep 6, 2019